J3_9VTH_036
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AAG*CUUUUUGGACCCAAG*CGAU
- Length
- 22 nucleotides
- Bulged bases
- 9VTH|1|14|U|2553, 9VTH|1|14|U|2554, 9VTH|1|14|U|2555, 9VTH|1|14|G|2558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|A|2534
9VTH|1|14|A|2535
9VTH|1|14|G|2536
*
9VTH|1|14|C|2552
9VTH|1|14|U|2553
9VTH|1|14|U|2554
9VTH|1|14|U|2555
9VTH|1|14|U|2556
9VTH|1|14|U|2557
9VTH|1|14|G|2558
9VTH|1|14|G|2559
9VTH|1|14|A|2560
9VTH|1|14|C|2561
9VTH|1|14|C|2562
9VTH|1|14|C|2563
9VTH|1|14|A|2564
9VTH|1|14|A|2565
9VTH|1|14|G|2566
*
9VTH|1|14|C|2581
9VTH|1|14|G|2582
9VTH|1|14|A|2583
9VTH|1|14|U|2584
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LR
- 60S ribosomal protein L7a
- Chain Lb
- 60S ribosomal protein L27
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- Large ribosomal subunit protein eL34
- Chain Lq
- 60S ribosomal protein L37a
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