J3_9VTH_037
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUC*GCCUAACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9VTH|1|14|C|2763, 9VTH|1|14|U|2800
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_037 not in the Motif Atlas
- Homologous match to J3_9PN5_020
- Geometric discrepancy: 0.0603
- The information below is about J3_9PN5_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.4
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9VTH|1|14|G|2654
9VTH|1|14|U|2655
9VTH|1|14|C|2656
*
9VTH|1|14|G|2757
9VTH|1|14|C|2758
9VTH|1|14|C|2759
9VTH|1|14|U|2760
9VTH|1|14|A|2761
9VTH|1|14|A|2762
9VTH|1|14|C|2763
9VTH|1|14|G|2764
9VTH|1|14|A|2765
9VTH|1|14|U|2766
9VTH|1|14|C|2767
9VTH|1|14|C|2768
*
9VTH|1|14|G|2796
9VTH|1|14|G|2797
9VTH|1|14|U|2798
9VTH|1|14|G|2799
9VTH|1|14|U|2800
9VTH|1|14|C|2801
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 10
- RNA (204-MER)
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LV
- 60S ribosomal protein L18-2
- Chain LY
- 60S ribosomal protein L21-1-like
- Chain Lp
- 60S ribosomal protein L44
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