J3_9VTH_039
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAUC*GUU*ACCAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|14|A|2890, 9VTH|1|14|U|2891
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_039 not in the Motif Atlas
- Homologous match to J3_9H3G_024
- Geometric discrepancy: 0.09
- The information below is about J3_9H3G_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.4
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|14|U|2889
9VTH|1|14|A|2890
9VTH|1|14|U|2891
9VTH|1|14|C|2892
*
9VTH|1|14|G|2917
9VTH|1|14|U|2918
9VTH|1|14|U|2919
*
9VTH|1|14|A|2933
9VTH|1|14|C|2934
9VTH|1|14|C|2935
9VTH|1|14|A|2936
9VTH|1|14|A|2937
9VTH|1|14|U|2938
9VTH|1|14|A|2939
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L3
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LH
- 60S ribosomal protein L23
Coloring options: