J3_9VTH_040
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUUGCCG*CACGUGUCGUUG*CUUGAAGUACAAUUUCCAUC
- Length
- 40 nucleotides
- Bulged bases
- 9VTH|1|14|C|3168, 9VTH|1|14|U|3169, 9VTH|1|14|C|3173, 9VTH|1|14|U|3212, 9VTH|1|14|A|3259, 9VTH|1|14|U|3261, 9VTH|1|14|C|3263, 9VTH|1|14|U|3266, 9VTH|1|14|U|3267
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|G|3167
9VTH|1|14|C|3168
9VTH|1|14|U|3169
9VTH|1|14|U|3170
9VTH|1|14|G|3171
9VTH|1|14|C|3172
9VTH|1|14|C|3173
9VTH|1|14|G|3174
*
9VTH|1|14|C|3206
9VTH|1|14|A|3207
9VTH|1|14|C|3208
9VTH|1|14|G|3209
9VTH|1|14|U|3210
9VTH|1|14|G|3211
9VTH|1|14|U|3212
9VTH|1|14|C|3213
9VTH|1|14|G|3214
9VTH|1|14|U|3215
9VTH|1|14|U|3216
9VTH|1|14|G|3217
*
9VTH|1|14|C|3254
9VTH|1|14|U|3255
9VTH|1|14|U|3256
9VTH|1|14|G|3257
9VTH|1|14|A|3258
9VTH|1|14|A|3259
9VTH|1|14|G|3260
9VTH|1|14|U|3261
9VTH|1|14|A|3262
9VTH|1|14|C|3263
9VTH|1|14|A|3264
9VTH|1|14|A|3265
9VTH|1|14|U|3266
9VTH|1|14|U|3267
9VTH|1|14|U|3268
9VTH|1|14|C|3269
9VTH|1|14|C|3270
9VTH|1|14|A|3271
9VTH|1|14|U|3272
9VTH|1|14|C|3273
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LQ
- 60S ribosomal protein L6-like isoform X1
- Chain LT
- 60S ribosomal protein L14-1
- Chain Lh
- 60S ribosomal protein L35a-3-like
Coloring options: