J3_9VVI_005
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9VVI|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VVI_005 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2379
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|A|U|672
9VVI|1|A|A|673
*
9VVI|1|A|U|717
9VVI|1|A|A|718
9VVI|1|A|C|719
9VVI|1|A|C|720
9VVI|1|A|G|721
9VVI|1|A|G|722
9VVI|1|A|U|723
9VVI|1|A|G|724
9VVI|1|A|G|725
*
9VVI|1|A|C|732
9VVI|1|A|G|733
9VVI|1|A|G|734
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6, fully modified isoform
- Chain K
- Small ribosomal subunit protein uS11
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18
- Chain U
- 30S ribosomal protein S21
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