J3_9VVI_007
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VVI_007 not in the Motif Atlas
- Homologous match to J3_6CZR_061
- Geometric discrepancy: 0.1153
- The information below is about J3_6CZR_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|A|C|936
9VVI|1|A|A|937
9VVI|1|A|A|938
9VVI|1|A|G|939
*
9VVI|1|A|C|1344
9VVI|1|A|U|1345
9VVI|1|A|A|1346
9VVI|1|A|G|1347
9VVI|1|A|U|1348
9VVI|1|A|A|1349
9VVI|1|A|A|1350
*
9VVI|1|A|U|1372
9VVI|1|A|G|1373
9VVI|1|A|A|1374
9VVI|1|A|A|1375
9VVI|1|A|U|1376
9VVI|1|A|A|1377
9VVI|1|A|C|1378
9VVI|1|A|G|1379
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
Coloring options: