J3_9VVI_018

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VVI_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0679

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9VVI|1|a|G|30
9VVI|1|a|C|31
*
9VVI|1|a|G|474
9VVI|1|a|C|475
9VVI|1|a|G|476
9VVI|1|a|A|477
9VVI|1|a|A|478
9VVI|1|a|A|479
9VVI|1|a|A|480
9VVI|1|a|G|481
*
9VVI|1|a|C|509
9VVI|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

50S ribosomal protein L24