J3_9VVI_022

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9VVI|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VVI_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0482

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9VVI|1|a|G|297
9VVI|1|a|G|298
9VVI|1|a|A|299
9VVI|1|a|A|300
9VVI|1|a|G|301
*
9VVI|1|a|C|316
9VVI|1|a|G|317
9VVI|1|a|C|318
9VVI|1|a|G|319
9VVI|1|a|A|320
9VVI|1|a|U|321
9VVI|1|a|A|322
9VVI|1|a|C|323
9VVI|1|a|A|324
9VVI|1|a|G|325
*
9VVI|1|a|C|337
9VVI|1|a|G|338
9VVI|1|a|U|339
9VVI|1|a|A|340
9VVI|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24