J3_9VXM_004
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAG*CACAC*GAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VXM_004 not in the Motif Atlas
- Homologous match to J3_7A0S_005
- Geometric discrepancy: 0.1659
- The information below is about J3_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.3
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9VXM|1|A|C|1930
9VXM|1|A|A|1931
9VXM|1|A|G|1932
*
9VXM|1|A|C|1942
9VXM|1|A|A|1943
9VXM|1|A|C|1944
9VXM|1|A|A|1945
9VXM|1|A|C|1946
*
9VXM|1|A|G|1970
9VXM|1|A|A|1971
9VXM|1|A|A|1972
9VXM|1|A|G|1973
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2m
Coloring options: