J3_9VXN_003
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9VXN|1|L5|U|354, 9VXN|1|L5|A|362, 9VXN|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|C|351
9VXN|1|L5|G|352
9VXN|1|L5|A|353
9VXN|1|L5|U|354
9VXN|1|L5|A|355
9VXN|1|L5|G|356
9VXN|1|L5|U|357
9VXN|1|L5|C|358
9VXN|1|L5|A|359
9VXN|1|L5|A|360
9VXN|1|L5|C|361
9VXN|1|L5|A|362
9VXN|1|L5|A|363
9VXN|1|L5|G|364
9VXN|1|L5|U|365
9VXN|1|L5|A|366
9VXN|1|L5|C|367
*
9VXN|1|L5|G|374
9VXN|1|L5|G|375
9VXN|1|L5|A|376
9VXN|1|L5|A|377
9VXN|1|L5|A|378
9VXN|1|L5|G|379
*
9VXN|1|L8|C|21
9VXN|1|L8|U|22
9VXN|1|L8|C|23
9VXN|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LY
- Large ribosomal subunit protein uL24
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: