J3_9VXN_004
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VXN_004 not in the Motif Atlas
- Geometric match to J3_8GLP_025
- Geometric discrepancy: 0.037
- The information below is about J3_8GLP_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9VXN|1|L5|U|380
9VXN|1|L5|U|381
9VXN|1|L5|G|382
9VXN|1|L5|A|383
9VXN|1|L5|A|384
9VXN|1|L5|A|385
9VXN|1|L5|A|386
9VXN|1|L5|G|387
*
9VXN|1|L5|C|414
9VXN|1|L5|G|415
*
9VXN|1|L8|C|19
9VXN|1|L8|A|20
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LY
- Large ribosomal subunit protein uL24
- Chain Ll
- Large ribosomal subunit protein eL39
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