J3_9VXN_011

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9VXN|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|C|2393
9VXN|1|L5|G|2394
9VXN|1|L5|A|2395
9VXN|1|L5|A|2396
9VXN|1|L5|G|2397
9VXN|1|L5|U|2398
9VXN|1|L5|G|2399
*
9VXN|1|L5|C|2805
9VXN|1|L5|A|2806
9VXN|1|L5|A|2807
*
9VXN|1|L5|U|2819
9VXN|1|L5|C|2820
9VXN|1|L5|U|2821
9VXN|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Lg

Large ribosomal subunit protein eL34