J3_9VXN_014
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 9VXN|1|L5|C|2470, 9VXN|1|L5|A|2472, 9VXN|1|L5|G|2475, 9VXN|1|L5|G|2503, 9VXN|1|L5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|A|2451
9VXN|1|L5|G|2452
9VXN|1|L5|A|2453
9VXN|1|L5|U|2454
9VXN|1|L5|G|2455
9VXN|1|L5|G|2456
*
9VXN|1|L5|C|2465
9VXN|1|L5|G|2466
9VXN|1|L5|U|2467
9VXN|1|L5|U|2468
9VXN|1|L5|C|2469
9VXN|1|L5|C|2470
9VXN|1|L5|G|2471
9VXN|1|L5|A|2472
9VXN|1|L5|A|2473
9VXN|1|L5|G|2474
9VXN|1|L5|G|2475
9VXN|1|L5|G|2476
*
9VXN|1|L5|C|2501
9VXN|1|L5|G|2502
9VXN|1|L5|G|2503
9VXN|1|L5|C|2504
9VXN|1|L5|C|2505
9VXN|1|L5|G|2506
9VXN|1|L5|A|2507
9VXN|1|L5|PSU|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lj
- Large ribosomal subunit protein eL37
Coloring options: