J3_9VXN_015

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9VXN|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|A|2551
9VXN|1|L5|G|2552
9VXN|1|L5|A|2553
9VXN|1|L5|U|2554
9VXN|1|L5|G|2555
*
9VXN|1|L5|C|2572
9VXN|1|L5|A|2573
9VXN|1|L5|G|2574
9VXN|1|L5|U|2575
*
9VXN|1|L5|A|2757
9VXN|1|L5|G|2758
9VXN|1|L5|G|2759
9VXN|1|L5|G|2760
9VXN|1|L5|U|2761
9VXN|1|L5|G|2762
9VXN|1|L5|U|2763
9VXN|1|L5|A|2764
9VXN|1|L5|A|2765
9VXN|1|L5|A|2766
9VXN|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27