J3_9VXN_018

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9VXN|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|C|3937
9VXN|1|L5|G|3938
9VXN|1|L5|G|3939
*
9VXN|1|L5|C|4074
9VXN|1|L5|U|4075
9VXN|1|L5|G|4076
9VXN|1|L5|A|4077
9VXN|1|L5|C|4078
*
9VXN|1|L5|G|4168
9VXN|1|L5|G|4169
9VXN|1|L5|A|4170
9VXN|1|L5|C|4171
9VXN|1|L5|A|4172
9VXN|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15