J3_9W0N_002
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9W0N|1|1|A|504, 9W0N|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_002 not in the Motif Atlas
- Homologous match to J3_8B0X_032
- Geometric discrepancy: 0.1166
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9W0N|1|1|G|30
9W0N|1|1|C|31
*
9W0N|1|1|G|474
9W0N|1|1|C|475
9W0N|1|1|G|476
9W0N|1|1|A|477
9W0N|1|1|A|478
9W0N|1|1|A|479
9W0N|1|1|A|480
9W0N|1|1|G|481
9W0N|1|1|A|482
9W0N|1|1|A|483
9W0N|1|1|C|484
*
9W0N|1|1|G|496
9W0N|1|1|A|497
9W0N|1|1|G|498
9W0N|1|1|U|499
9W0N|1|1|G|500
9W0N|1|1|A|501
9W0N|1|1|A|502
9W0N|1|1|A|503
9W0N|1|1|A|504
9W0N|1|1|A|505
9W0N|1|1|G|506
9W0N|1|1|A|507
9W0N|1|1|A|508
9W0N|1|1|C|509
9W0N|1|1|C|510
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain q
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL22
- Chain u
- Large ribosomal subunit protein uL24
Coloring options: