J3_9W0N_003
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9W0N|1|1|U|34, 9W0N|1|1|U|448, 9W0N|1|1|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_003 not in the Motif Atlas
- Homologous match to J3_8B0X_033
- Geometric discrepancy: 0.1229
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9W0N|1|1|C|32
9W0N|1|1|C|33
9W0N|1|1|U|34
9W0N|1|1|G|35
*
9W0N|1|1|C|445
9W0N|1|1|G|446
9W0N|1|1|A|447
9W0N|1|1|U|448
9W0N|1|1|A|449
9W0N|1|1|G|450
9W0N|1|1|U|451
9W0N|1|1|G|452
9W0N|1|1|A|453
9W0N|1|1|A|454
9W0N|1|1|C|455
9W0N|1|1|C|456
9W0N|1|1|A|457
9W0N|1|1|G|458
9W0N|1|1|U|459
9W0N|1|1|A|460
9W0N|1|1|C|461
*
9W0N|1|1|G|468
9W0N|1|1|G|469
9W0N|1|1|A|470
9W0N|1|1|A|471
9W0N|1|1|A|472
9W0N|1|1|G|473
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
- Chain d
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein bL20
- Chain t
- Large ribosomal subunit protein uL23
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