J3_9W0N_004
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9W0N|1|1|U|72, 9W0N|1|1|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_004 not in the Motif Atlas
- Homologous match to J3_8B0X_015
- Geometric discrepancy: 0.111
- The information below is about J3_8B0X_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9W0N|1|1|A|56
9W0N|1|1|C|57
*
9W0N|1|1|G|70
9W0N|1|1|A|71
9W0N|1|1|U|72
9W0N|1|1|A|73
9W0N|1|1|A|74
9W0N|1|1|G|75
9W0N|1|1|C|76
*
9W0N|1|1|G|110
9W0N|1|1|A|111
9W0N|1|1|U|112
9W0N|1|1|U|113
9W0N|1|1|U|114
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
- Chain t
- Large ribosomal subunit protein uL23
- Chain y
- Large ribosomal subunit protein uL29
Coloring options: