J3_9W0N_007

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9W0N_007 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.1631

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9W0N|1|1|C|698
9W0N|1|1|A|699
9W0N|1|1|G|700
*
9W0N|1|1|C|732
9W0N|1|1|G|733
9W0N|1|1|A|734
9W0N|1|1|A|735
9W0N|1|1|C|736
*
9W0N|1|1|G|760
9W0N|1|1|A|761
9W0N|1|1|U|762
9W0N|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL2