J3_9W0N_011

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9W0N_011 not in the Motif Atlas

Homologous match to J3_8B0X_020

Geometric discrepancy: 0.1336

The information below is about J3_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9W0N|1|1|U|1344
9W0N|1|1|C|1345
9W0N|1|1|G|1346
9W0N|1|1|A|1347
9W0N|1|1|C|1348
9W0N|1|1|C|1349
*
9W0N|1|1|G|1382
9W0N|1|1|A|1383
9W0N|1|1|A|1384
9W0N|1|1|A|1385
*
9W0N|1|1|U|1402
9W0N|1|1|A|1403

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23