J3_9W0N_014
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9W0N|1|1|U|2390, 9W0N|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_014 not in the Motif Atlas
- Homologous match to J3_8B0X_036
- Geometric discrepancy: 0.1149
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9W0N|1|1|G|2282
9W0N|1|1|C|2283
9W0N|1|1|A|2284
*
9W0N|1|1|U|2384
9W0N|1|1|C|2385
9W0N|1|1|A|2386
9W0N|1|1|U|2387
9W0N|1|1|A|2388
9W0N|1|1|G|2389
9W0N|1|1|U|2390
9W0N|1|1|G|2391
9W0N|1|1|A|2392
9W0N|1|1|U|2393
9W0N|1|1|C|2394
9W0N|1|1|C|2395
*
9W0N|1|1|G|2421
9W0N|1|1|C|2422
9W0N|1|1|U|2423
9W0N|1|1|C|2424
9W0N|1|1|A|2425
9W0N|1|1|A|2426
9W0N|1|1|C|2427
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain C
- Large ribosomal subunit protein bL33
- Chain E
- Large ribosomal subunit protein bL35
- Chain l
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein bL27
Coloring options: