J3_9W0N_018
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9W0N|1|1|U|2833, 9W0N|1|1|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_018 not in the Motif Atlas
- Homologous match to J3_8B0X_025
- Geometric discrepancy: 0.0907
- The information below is about J3_8B0X_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|1|G|2812
9W0N|1|1|A|2813
9W0N|1|1|A|2814
9W0N|1|1|C|2815
*
9W0N|1|1|G|2831
9W0N|1|1|U|2832
9W0N|1|1|U|2833
9W0N|1|1|G|2834
9W0N|1|1|A|2835
9W0N|1|1|U|2836
*
9W0N|1|1|A|2882
9W0N|1|1|A|2883
9W0N|1|1|U|2884
9W0N|1|1|G|2885
9W0N|1|1|A|2886
9W0N|1|1|A|2887
9W0N|1|1|C|2888
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein bL32
- Chain c
- Large ribosomal subunit protein uL3
- Chain n
- Large ribosomal subunit protein bL17
- Chain s
- Large ribosomal subunit protein uL22
Coloring options: