J3_9W0N_019
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9W0N|1|2|U|14, 9W0N|1|2|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_019 not in the Motif Atlas
- Homologous match to J3_8B0X_026
- Geometric discrepancy: 0.1194
- The information below is about J3_8B0X_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|2|G|10
9W0N|1|2|C|11
9W0N|1|2|C|12
9W0N|1|2|G|13
9W0N|1|2|U|14
9W0N|1|2|A|15
9W0N|1|2|G|16
*
9W0N|1|2|C|68
9W0N|1|2|G|69
9W0N|1|2|C|70
*
9W0N|1|2|G|106
9W0N|1|2|G|107
9W0N|1|2|A|108
9W0N|1|2|A|109
9W0N|1|2|C|110
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL25
- Chain w
- Large ribosomal subunit protein bL27
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