J3_9W0N_026
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_026 not in the Motif Atlas
- Homologous match to J3_8B0X_005
- Geometric discrepancy: 0.0819
- The information below is about J3_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|C|936
9W0N|1|3|A|937
9W0N|1|3|A|938
9W0N|1|3|G|939
*
9W0N|1|3|C|1344
9W0N|1|3|U|1345
9W0N|1|3|A|1346
9W0N|1|3|G|1347
9W0N|1|3|U|1348
9W0N|1|3|A|1349
9W0N|1|3|A|1350
*
9W0N|1|3|U|1372
9W0N|1|3|G|1373
9W0N|1|3|A|1374
9W0N|1|3|A|1375
9W0N|1|3|U|1376
9W0N|1|3|A|1377
9W0N|1|3|C|1378
9W0N|1|3|G|1379
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain L
- Small ribosomal subunit protein uS7
- Chain N
- Small ribosomal subunit protein uS9
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