J3_9W0N_028
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9W0N|1|3|A|975, 9W0N|1|3|G|976, 9W0N|1|3|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_028 not in the Motif Atlas
- Homologous match to J3_8B0X_007
- Geometric discrepancy: 0.0797
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|U|955
9W0N|1|3|U|956
9W0N|1|3|U|957
9W0N|1|3|A|958
9W0N|1|3|A|959
9W0N|1|3|U|960
9W0N|1|3|U|961
9W0N|1|3|C|962
*
9W0N|1|3|G|973
9W0N|1|3|A|974
9W0N|1|3|A|975
9W0N|1|3|G|976
9W0N|1|3|A|977
9W0N|1|3|A|978
9W0N|1|3|C|979
9W0N|1|3|C|980
9W0N|1|3|U|981
9W0N|1|3|U|982
9W0N|1|3|A|983
9W0N|1|3|C|984
*
9W0N|1|3|G|1221
9W0N|1|3|G|1222
9W0N|1|3|C|1223
9W0N|1|3|U|1224
9W0N|1|3|A|1225
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 0
- Elongation factor G
- Chain O
- Small ribosomal subunit protein uS10
- Chain R
- Small ribosomal subunit protein uS13
- Chain S
- Small ribosomal subunit protein uS14
- Chain X
- Small ribosomal subunit protein uS19
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