J3_9WNR_011

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9WNR|1|A|U|1212, 9WNR|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.2265

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9WNR|1|A|C|990
9WNR|1|A|U|991
9WNR|1|A|U|992
9WNR|1|A|G|993
9WNR|1|A|A|994
9WNR|1|A|C|995
9WNR|1|A|A|996
9WNR|1|A|U|997
*
9WNR|1|A|A|1044
9WNR|1|A|C|1045
9WNR|1|A|A|1046
9WNR|1|A|G|1047
*
9WNR|1|A|C|1210
9WNR|1|A|U|1211
9WNR|1|A|U|1212
9WNR|1|A|A|1213
9WNR|1|A|C|1214
9WNR|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14