J3_9WNR_018

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.1191

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9WNR|1|b|G|30
9WNR|1|b|C|31
*
9WNR|1|b|G|474
9WNR|1|b|C|475
9WNR|1|b|G|476
9WNR|1|b|A|477
9WNR|1|b|A|478
9WNR|1|b|A|479
9WNR|1|b|A|480
9WNR|1|b|G|481
*
9WNR|1|b|C|509
9WNR|1|b|C|510

Current chains

Chain b

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein bL20

Chain v

50S ribosomal protein L24