J3_9WNR_026

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9WNR|1|b|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_026 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2108

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9WNR|1|b|C|1298
9WNR|1|b|G|1299
9WNR|1|b|G|1300
9WNR|1|b|A|1301
9WNR|1|b|A|1302
9WNR|1|b|G|1303
*
9WNR|1|b|C|1625
9WNR|1|b|A|1626
9WNR|1|b|G|1627
*
9WNR|1|b|C|1639
9WNR|1|b|A|1640
9WNR|1|b|A|1641
9WNR|1|b|G|1642

Current chains

Chain b

23S rRNA

Nearby chains