J3_9WNR_029

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_029 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1485

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9WNR|1|b|G|1424
9WNR|1|b|G|1425
9WNR|1|b|G|1426
9WNR|1|b|A|1427
9WNR|1|b|C|1428
9WNR|1|b|G|1429
*
9WNR|1|b|C|1564
9WNR|1|b|C|1565
*
9WNR|1|b|G|1568
9WNR|1|b|A|1569
9WNR|1|b|A|1570
9WNR|1|b|A|1571
9WNR|1|b|A|1572
9WNR|1|b|G|1573
9WNR|1|b|C|1574

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2