J3_9WW4_003

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

9WW4|1|AA|U|354, 9WW4|1|AA|A|362, 9WW4|1|AC|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_003 not in the Motif Atlas

Homologous match to J3_8GLP_024

Geometric discrepancy: 0.0342

The information below is about J3_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.4

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|C|351
9WW4|1|AA|G|352
9WW4|1|AA|A|353
9WW4|1|AA|U|354
9WW4|1|AA|A|355
9WW4|1|AA|G|356
9WW4|1|AA|U|357
9WW4|1|AA|C|358
9WW4|1|AA|A|359
9WW4|1|AA|A|360
9WW4|1|AA|C|361
9WW4|1|AA|A|362
9WW4|1|AA|A|363
9WW4|1|AA|G|364
9WW4|1|AA|U|365
9WW4|1|AA|A|366
9WW4|1|AA|C|367
*
9WW4|1|AA|G|374
9WW4|1|AA|G|375
9WW4|1|AA|A|376
9WW4|1|AA|A|377
9WW4|1|AA|A|378
9WW4|1|AA|G|379
*
9WW4|1|AC|C|21
9WW4|1|AC|U|22
9WW4|1|AC|C|23
9WW4|1|AC|G|24

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Aa

60S ribosomal protein L26

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39