J3_9WW4_009

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_009 not in the Motif Atlas

Homologous match to J3_9H3G_013

Geometric discrepancy: 0.099

The information below is about J3_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.4

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|C|1546
9WW4|1|AA|A|1547
9WW4|1|AA|G|1548
*
9WW4|1|AA|C|1580
9WW4|1|AA|G|1581
9WW4|1|AA|PSU|1582
9WW4|1|AA|A|1583
9WW4|1|AA|G|1584
*
9WW4|1|AA|U|1609
9WW4|1|AA|C|1610
9WW4|1|AA|C|1611
9WW4|1|AA|G|1612

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AT

60S ribosomal protein L19

Chain Ai

60S ribosomal protein L34

Chain Ar

60S ribosomal protein L37a