J3_9WW4_011
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9WW4|1|AA|A|2396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_011 not in the Motif Atlas
- Homologous match to J3_9AXU_013
- Geometric discrepancy: 0.0469
- The information below is about J3_9AXU_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.4
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9WW4|1|AA|C|2393
9WW4|1|AA|G|2394
9WW4|1|AA|A|2395
9WW4|1|AA|A|2396
9WW4|1|AA|G|2397
9WW4|1|AA|U|2398
9WW4|1|AA|G|2399
*
9WW4|1|AA|C|2805
9WW4|1|AA|A|2806
9WW4|1|AA|A|2807
*
9WW4|1|AA|U|2819
9WW4|1|AA|C|2820
9WW4|1|AA|U|2821
9WW4|1|AA|G|2822
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AT
- 60S ribosomal protein L19
- Chain Ai
- 60S ribosomal protein L34
Coloring options: