J3_9WW4_012
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9WW4|1|AA|U|2788, 9WW4|1|AA|A|2789
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_012 not in the Motif Atlas
- Homologous match to J3_8GLP_005
- Geometric discrepancy: 0.0439
- The information below is about J3_8GLP_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9WW4|1|AA|G|2402
9WW4|1|AA|A|2403
9WW4|1|AA|A|2404
9WW4|1|AA|G|2405
*
9WW4|1|AA|C|2785
9WW4|1|AA|C|2786
9WW4|1|AA|A2M|2787
9WW4|1|AA|U|2788
9WW4|1|AA|A|2789
9WW4|1|AA|U|2790
9WW4|1|AA|C|2791
*
9WW4|1|AA|G|2800
9WW4|1|AA|U|2801
9WW4|1|AA|C|2802
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain Ai
- 60S ribosomal protein L34
- Chain Al
- 60S ribosomal protein L37
- Chain An
- 60S ribosomal protein L39
Coloring options: