J3_9WW4_014

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)

Length

26 nucleotides

Bulged bases

9WW4|1|AA|C|2470, 9WW4|1|AA|A|2472, 9WW4|1|AA|G|2475, 9WW4|1|AA|G|2503, 9WW4|1|AA|C|2504

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_014 not in the Motif Atlas

Homologous match to J3_8GLP_031

Geometric discrepancy: 0.403

The information below is about J3_8GLP_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

9WW4|1|AA|A|2451
9WW4|1|AA|G|2452
9WW4|1|AA|A|2453
9WW4|1|AA|U|2454
9WW4|1|AA|G|2455
9WW4|1|AA|G|2456
*
9WW4|1|AA|C|2465
9WW4|1|AA|G|2466
9WW4|1|AA|U|2467
9WW4|1|AA|U|2468
9WW4|1|AA|C|2469
9WW4|1|AA|C|2470
9WW4|1|AA|G|2471
9WW4|1|AA|A|2472
9WW4|1|AA|A|2473
9WW4|1|AA|G|2474
9WW4|1|AA|G|2475
9WW4|1|AA|G|2476
*
9WW4|1|AA|C|2501
9WW4|1|AA|G|2502
9WW4|1|AA|G|2503
9WW4|1|AA|C|2504
9WW4|1|AA|C|2505
9WW4|1|AA|G|2506
9WW4|1|AA|A|2507
9WW4|1|AA|PSU|2508

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AD

60S ribosomal protein L8

Chain AJ

60S ribosomal protein L7a

Chain AP

60S ribosomal protein L15

Chain AZ

60S ribosomal protein L23a

Chain Al

60S ribosomal protein L37