J3_9WW4_024

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

9WW4|1|AB|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_024 not in the Motif Atlas

Homologous match to J3_8QYX_024

Geometric discrepancy: 0.0446

The information below is about J3_8QYX_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.4

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

8

Unit IDs

9WW4|1|AB|C|9
9WW4|1|AB|C|10
9WW4|1|AB|A|11
9WW4|1|AB|U|12
9WW4|1|AB|A|13
9WW4|1|AB|C|14
*
9WW4|1|AB|G|65
9WW4|1|AB|G|66
*
9WW4|1|AB|U|109
9WW4|1|AB|G|110

Current chains

Chain AB

5S rRNA (120-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

Large ribosomal subunit protein uL18

Chain AL

Ribosomal protein uL16-like

Chain AV

60S ribosomal protein L21