J3_9WW4_032
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CCG*(PSU)UCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9WW4|1|BA|C|1138, 9WW4|1|BA|A|1150
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_032 not in the Motif Atlas
- Homologous match to J3_9H3G_034
- Geometric discrepancy: 0.2336
- The information below is about J3_9H3G_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|BA|C|1094
9WW4|1|BA|C|1095
9WW4|1|BA|G|1096
*
9WW4|1|BA|PSU|1136
9WW4|1|BA|U|1137
9WW4|1|BA|C|1138
9WW4|1|BA|C|1139
9WW4|1|BA|G|1140
*
9WW4|1|BA|C|1147
9WW4|1|BA|A|1148
9WW4|1|BA|A|1149
9WW4|1|BA|A|1150
9WW4|1|BA|G|1151
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BC
- Small ribosomal subunit protein uS2
- Chain BP
- 40S ribosomal protein S21
- Chain BR
- 40S ribosomal protein S26
- Chain Bb
- 40S ribosomal protein S15a
- Chain Be
- 40S ribosomal protein S27
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