J3_9WW4_033
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_033 not in the Motif Atlas
- Homologous match to J3_9H3G_035
- Geometric discrepancy: 0.1264
- The information below is about J3_9H3G_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
9WW4|1|BA|C|1218
9WW4|1|BA|C|1219
9WW4|1|BA|A|1220
9WW4|1|BA|G|1221
*
9WW4|1|BA|C|1645
9WW4|1|BA|C|1646
9WW4|1|BA|A|1647
9WW4|1|BA|G|1648
9WW4|1|BA|U|1649
9WW4|1|BA|A|1650
9WW4|1|BA|A|1651
*
9WW4|1|BA|U|1673
9WW4|1|BA|G|1674
9WW4|1|BA|A|1675
9WW4|1|BA|U|1676
9WW4|1|BA|U|1677
9WW4|1|BA|A2M|1678
9WW4|1|BA|A|1679
9WW4|1|BA|G|1680
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S5
- Chain BL
- 40S ribosomal protein S16
- Chain BS
- 40S ribosomal protein S28
Coloring options: