J3_9WW4_034

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGGA*UAC*G(G7M)AA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_034 not in the Motif Atlas

Homologous match to J3_9SUM_033

Geometric discrepancy: 0.0659

The information below is about J3_9SUM_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|U|1225
9WW4|1|BA|G|1226
9WW4|1|BA|G|1227
9WW4|1|BA|A|1228
*
9WW4|1|BA|U|1530
9WW4|1|BA|A|1531
9WW4|1|BA|C|1532
*
9WW4|1|BA|G|1638
9WW4|1|BA|G7M|1639
9WW4|1|BA|A|1640
9WW4|1|BA|A|1641

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BL

40S ribosomal protein S16

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19