J3_9WW4_035
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9WW4|1|BA|G|1256, 9WW4|1|BA|A|1258, 9WW4|1|BA|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_035 not in the Motif Atlas
- Homologous match to J3_9SUM_034
- Geometric discrepancy: 0.0872
- The information below is about J3_9SUM_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9WW4|1|BA|C|1237
9WW4|1|BA|PSU|1238
9WW4|1|BA|U|1239
9WW4|1|BA|A|1240
9WW4|1|BA|A|1241
9WW4|1|BA|U|1242
9WW4|1|BA|U|1243
9WW4|1|BA|PSU|1244
*
9WW4|1|BA|G|1255
9WW4|1|BA|G|1256
9WW4|1|BA|G|1257
9WW4|1|BA|A|1258
9WW4|1|BA|A|1259
9WW4|1|BA|A|1260
9WW4|1|BA|C|1261
9WW4|1|BA|C|1262
9WW4|1|BA|U|1263
9WW4|1|BA|C|1264
9WW4|1|BA|A|1265
9WW4|1|BA|C|1266
*
9WW4|1|BA|G|1516
9WW4|1|BA|G|1517
9WW4|1|BA|C|1518
9WW4|1|BA|U|1519
9WW4|1|BA|G|1520
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BK
- 40S ribosomal protein S15
- Chain BM
- 40S ribosomal protein S18
- Chain BO
- 40S ribosomal protein S20
- Chain BT
- 40S ribosomal protein S29
Coloring options: