J3_9WW4_037
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_037 not in the Motif Atlas
- Homologous match to J3_9H3G_039
- Geometric discrepancy: 0.0953
- The information below is about J3_9H3G_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9WW4|1|BA|U|1340
9WW4|1|BA|C|1341
9WW4|1|BA|U|1342
9WW4|1|BA|U|1343
9WW4|1|BA|A|1344
9WW4|1|BA|G|1345
*
9WW4|1|BA|C|1384
9WW4|1|BA|G|1385
9WW4|1|BA|A|1386
9WW4|1|BA|G|1387
9WW4|1|BA|A|1388
9WW4|1|BA|C|1389
*
9WW4|1|BA|G|1481
9WW4|1|BA|C|1482
9WW4|1|BA|A|1483
9WW4|1|BA|A|1484
9WW4|1|BA|U|1485
9WW4|1|BA|A|1486
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BE
- 40S ribosomal protein S3
- Chain BL
- 40S ribosomal protein S16
- Chain BO
- 40S ribosomal protein S20
- Chain BT
- 40S ribosomal protein S29
- Chain BV
- 40S ribosomal protein S2
- Chain Bh
- 40S ribosomal protein S17
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