J3_9WW4_038

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UG*(PSU)GUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_038 not in the Motif Atlas

Homologous match to J3_9SUM_037

Geometric discrepancy: 0.0729

The information below is about J3_9SUM_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.7

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|BA|U|1350
9WW4|1|BA|G|1351
*
9WW4|1|BA|PSU|1360
9WW4|1|BA|G|1361
9WW4|1|BA|U|1362
9WW4|1|BA|C|1363
*
9WW4|1|BA|G|1375
9WW4|1|BA|A|1376
9WW4|1|BA|U|1377
9WW4|1|BA|A|1378
9WW4|1|BA|A|1379

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BC

Small ribosomal subunit protein uS2

Chain BV

40S ribosomal protein S2

Chain Bh

40S ribosomal protein S17