J3_9WW4_040

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9WW4|1|BA|U|1535, 9WW4|1|BA|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_040 not in the Motif Atlas

Homologous match to J3_9PN5_043

Geometric discrepancy: 0.1335

The information below is about J3_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|C|1532
9WW4|1|BA|A|1533
9WW4|1|BA|C|1534
9WW4|1|BA|U|1535
9WW4|1|BA|G|1536
*
9WW4|1|BA|C|1597
9WW4|1|BA|G|1598
9WW4|1|BA|U|1599
9WW4|1|BA|G|1600
9WW4|1|BA|A|1601
9WW4|1|BA|U|1602
9WW4|1|BA|G|1603
9WW4|1|BA|G|1604
*
9WW4|1|BA|C|1635
9WW4|1|BA|G|1636
9WW4|1|BA|A|1637
9WW4|1|BA|G|1638

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19

Chain Bd

40S ribosomal protein S25