J3_9WW5_004

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9WW5|1|AA|G|409, 9WW5|1|AA|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_004 not in the Motif Atlas

Homologous match to J3_8GLP_026

Geometric discrepancy: 0.0803

The information below is about J3_8GLP_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.4

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9WW5|1|AA|U|380
9WW5|1|AA|U|381
9WW5|1|AA|G|382
9WW5|1|AA|A|383
9WW5|1|AA|A|384
9WW5|1|AA|A|385
9WW5|1|AA|A|386
9WW5|1|AA|G|387
9WW5|1|AA|A|388
9WW5|1|AA|A|389
9WW5|1|AA|C|390
*
9WW5|1|AA|G|401
9WW5|1|AA|A|402
9WW5|1|AA|G|403
9WW5|1|AA|U|404
9WW5|1|AA|U|405
9WW5|1|AA|C|406
9WW5|1|AA|A|407
9WW5|1|AA|A|408
9WW5|1|AA|G|409
9WW5|1|AA|A|410
9WW5|1|AA|G|411
9WW5|1|AA|G|412
9WW5|1|AA|G|413
9WW5|1|AA|C|414
9WW5|1|AA|G|415
*
9WW5|1|AC|C|19
9WW5|1|AC|A|20

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AR

60S ribosomal protein L17

Chain Aa

60S ribosomal protein L26

Chain An

60S ribosomal protein L39