J3_9WW5_018

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

(OMG)UC*GCCUUACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9WW5|1|AA|C|4337, 9WW5|1|AA|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_018 not in the Motif Atlas

Homologous match to J3_8GLP_034

Geometric discrepancy: 0.041

The information below is about J3_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.4

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9WW5|1|AA|OMG|4228
9WW5|1|AA|U|4229
9WW5|1|AA|C|4230
*
9WW5|1|AA|G|4331
9WW5|1|AA|C|4332
9WW5|1|AA|C|4333
9WW5|1|AA|U|4334
9WW5|1|AA|U|4335
9WW5|1|AA|A|4336
9WW5|1|AA|C|4337
9WW5|1|AA|G|4338
9WW5|1|AA|A|4339
9WW5|1|AA|U|4340
9WW5|1|AA|C|4341
9WW5|1|AA|C|4342
*
9WW5|1|AA|OMG|4370
9WW5|1|AA|G|4371
9WW5|1|AA|U|4372
9WW5|1|AA|G|4373
9WW5|1|AA|U|4374
9WW5|1|AA|C|4375

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AS

60S ribosomal protein L18

Chain AV

60S ribosomal protein L21

Chain Ac

Large ribosomal subunit protein uL15

Chain Aq

60S ribosomal protein L36a