J3_9WW5_019

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9WW5|1|AA|A|4280, 9WW5|1|AA|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_019 not in the Motif Atlas

Homologous match to J3_8GLP_009

Geometric discrepancy: 0.0438

The information below is about J3_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.4

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|C|4241
9WW5|1|AA|U|4242
9WW5|1|AA|C|4243
*
9WW5|1|AA|G|4267
9WW5|1|AA|A|4268
9WW5|1|AA|G|4269
*
9WW5|1|AA|C|4278
9WW5|1|AA|A|4279
9WW5|1|AA|A|4280
9WW5|1|AA|A|4281
9WW5|1|AA|A|4282
9WW5|1|AA|G|4283

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

Large ribosomal subunit protein uL18

Chain AM

60S ribosomal protein L11

Chain AV

60S ribosomal protein L21