J3_9WW5_020

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

9WW5|1|AA|A|4464, 9WW5|1|AA|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_020 not in the Motif Atlas

Homologous match to J3_9H3G_024

Geometric discrepancy: 0.064

The information below is about J3_9H3G_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.4

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9WW5|1|AA|U|4463
9WW5|1|AA|A|4464
9WW5|1|AA|U|4465
9WW5|1|AA|C|4466
*
9WW5|1|AA|G|4491
9WW5|1|AA|U|4492
9WW5|1|AA|PSU|4493
*
9WW5|1|AA|A|4507
9WW5|1|AA|C|4508
9WW5|1|AA|U|4509
9WW5|1|AA|A|4510
9WW5|1|AA|A|4511
9WW5|1|AA|U|4512
9WW5|1|AA|A|4513

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AQ

60S ribosomal protein L13a

Chain AX

60S ribosomal protein L23