J3_9WW5_022
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CA(PSU)*GCUUCU*AAGG
- Length
- 13 nucleotides
- Bulged bases
- 9WW5|1|AA|U|4989, 9WW5|1|AA|C|4990, 9WW5|1|AA|A|5061
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_022 not in the Motif Atlas
- Homologous match to J3_8GLP_037
- Geometric discrepancy: 0.5826
- The information below is about J3_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW5|1|AA|C|4970
9WW5|1|AA|A|4971
9WW5|1|AA|PSU|4972
*
9WW5|1|AA|G|4986
9WW5|1|AA|C|4987
9WW5|1|AA|U|4988
9WW5|1|AA|U|4989
9WW5|1|AA|C|4990
9WW5|1|AA|U|4991
*
9WW5|1|AA|A|5060
9WW5|1|AA|A|5061
9WW5|1|AA|G|5062
9WW5|1|AA|G|5063
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AE
- Large ribosomal subunit protein uL3
- Chain AR
- 60S ribosomal protein L17
- Chain Af
- 60S ribosomal protein L31
Coloring options: