J3_9WW5_026
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- U(OMG)G*(PSU)AAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9WW5|1|BA|G|921
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_026 not in the Motif Atlas
- Geometric match to J3_9H3G_030
- Geometric discrepancy: 0.1911
- The information below is about J3_9H3G_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9WW5|1|BA|U|682
9WW5|1|BA|OMG|683
9WW5|1|BA|G|684
*
9WW5|1|BA|PSU|918
9WW5|1|BA|A|919
9WW5|1|BA|A|920
9WW5|1|BA|G|921
9WW5|1|BA|A|922
*
9WW5|1|BA|U|1022
9WW5|1|BA|A|1023
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BG
- 40S ribosomal protein S7
- Chain BJ
- 40S ribosomal protein S11
- Chain BQ
- 40S ribosomal protein S23
- Chain BZ
- 40S ribosomal protein S13
- Chain Bb
- 40S ribosomal protein S15a
- Chain Be
- 40S ribosomal protein S27
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