J3_9WW5_034
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- (OMC)CGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9WW5|1|BA|G|1274, 9WW5|1|BA|G|1507, 9WW5|1|BA|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_034 not in the Motif Atlas
- Homologous match to J3_9H3G_038
- Geometric discrepancy: 0.2509
- The information below is about J3_9H3G_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9WW5|1|BA|OMC|1272
9WW5|1|BA|C|1273
9WW5|1|BA|G|1274
9WW5|1|BA|G|1275
9WW5|1|BA|A|1276
9WW5|1|BA|C|1277
*
9WW5|1|BA|G|1320
9WW5|1|BA|G|1321
9WW5|1|BA|G|1322
9WW5|1|BA|U|1323
9WW5|1|BA|G|1324
*
9WW5|1|BA|U|1504
9WW5|1|BA|U|1505
9WW5|1|BA|A|1506
9WW5|1|BA|G|1507
9WW5|1|BA|A|1508
9WW5|1|BA|U|1509
9WW5|1|BA|G|1510
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BI
- 40S ribosomal protein S10
- Chain BT
- 40S ribosomal protein S29
- Chain Bg
- Ubiquitin-40S ribosomal protein S27a
Coloring options: