J3_9XFK_004

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

9XFK|1|I|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFK_004 not in the Motif Atlas

Homologous match to J3_7A0S_002

Geometric discrepancy: 0.1684

The information below is about J3_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|A|56
9XFK|1|I|C|57
*
9XFK|1|I|G|70
9XFK|1|I|A|71
9XFK|1|I|U|72
9XFK|1|I|A|73
9XFK|1|I|A|74
9XFK|1|I|G|75
9XFK|1|I|C|76
*
9XFK|1|I|G|110
9XFK|1|I|A|111
9XFK|1|I|U|112
9XFK|1|I|U|113
9XFK|1|I|U|114

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain g

50S ribosomal protein L29

Chain k

50S ribosomal protein L34